#annotated input file for cmap_to_ps on cntct_map-2-ps
#remove all comments before using!

#Do you want to average maps?
yes
#Do you want to use an average reference map
no
#How many contact maps to read/draw
33/1
#what is file name for contacts?
calb_apo_001.dmap
calb_apo_002.dmap
calb_apo_003.dmap
calb_apo_004.dmap
calb_apo_005.dmap
calb_apo_006.dmap
calb_apo_007.dmap
calb_apo_008.dmap
calb_apo_009.dmap
calb_apo_010.dmap
calb_apo_011.dmap
calb_apo_012.dmap
calb_apo_013.dmap
calb_apo_014.dmap
calb_apo_015.dmap
calb_apo_016.dmap
calb_apo_017.dmap
calb_apo_018.dmap
calb_apo_019.dmap
calb_apo_020.dmap
calb_apo_021.dmap
calb_apo_022.dmap
calb_apo_023.dmap
calb_apo_024.dmap
calb_apo_025.dmap
calb_apo_026.dmap
calb_apo_027.dmap
calb_apo_028.dmap
calb_apo_029.dmap
calb_apo_030.dmap
calb_apo_031.dmap
calb_apo_032.dmap
calb_apo_033.dmap
#do you want to use structure "X" (from list above) in average?
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
yes
#cutoff value for maximum distance to be considered a contact.  Enter 0.0 if all distances in
#input file should be considered a contact
8.0
#Tells what the color scheme for plot is, and asks if you want to reverse it
no
#What residue offset to use?  This determines if residues close in sequence are shown as contacts
#0 means that even neighbors are shown as contacts.  3 would show only contacts between
#residues at least 3 apart in the sequence
0
#output file name
junk.ps
#number of maps to put in the x dimension (page layout)
1
#number of maps to put in the y dimension (page layout)
1
#number of residues
75
#tick mark display: first mark, spacing between marks.  5,5 means the first mark is at residue 
#number 5, and the next one is five residues later
5 5