=>> Init data
    Presuming executables of amber suite to be in /home/cmche/amber10/exe

=>> Reading input parameters
    Found PREFIX => md35
    Found PATH => ./
    Found COMPLEX => 1
    Found RECEPTOR => 1
    Found LIGAND => 1
    Found COMPT => ../../prmtop/cpt_wild_complex3.prmtop
    Found RECPT => ../../prmtop/cpt_wild_receptor3.prmtop
    Found LIGPT => ../../prmtop/cpt_ligand.prmtop
    Found GC => 0
    Found AS => 0
    Found DC => 0
    Found MM => 1
    Found GB => 1
    Found PB => 0
    Found MS => 0
    Found NM => 0
    Found DIELC => 1.0
    Found IGB => 2
    Found GBSA => 1
    Found SALTCON => 0.00
    Found EXTDIEL => 80.0
    Found INTDIEL => 1.0
    Found SURFTEN => 0.0072
    Found SURFOFF => 0.00
    Found PROBE => 0.0

=>> Checking sanity
    Checking GENERAL
    Setting START to default 1
    Setting STOP to default 10e10
    Setting OFFSET to default 1
    Setting VERBOSE to default 0
    Implicit SAS calc by sander
    Checking MM
    Checking GB

=>> Creating input
    Sander input

=>> Calculating energy / entropy contributions
    Calc contrib for ./md35_com.crd.1
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.2
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.3
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.4
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.5
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.6
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.7
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.8
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.9
        Calc MM/GB/SAS
    Calc contrib for ./md35_com.crd.10
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.1
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.2
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.3
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.4
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.5
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.6
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.7
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.8
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.9
        Calc MM/GB/SAS
    Calc contrib for ./md35_rec.crd.10
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.1
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.2
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.3
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.4
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.5
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.6
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.7
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.8
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.9
        Calc MM/GB/SAS
    Calc contrib for ./md35_lig.crd.10
        Calc MM/GB/SAS

=>> Doing statistics
=>> Reading input
=>> Reordering files
    Final order:
    1. md35_com.all.out: - 
    2. md35_rec.all.out: - 
    3. md35_lig.all.out: - 
=>> Reading files
    Reading md35_com.all.out
    WARNING: Missing SROT for NM in 0 -> Taken from -1
    WARNING: Missing STOT for NM in 0 -> Taken from -1
    WARNING: Missing STRA for NM in 0 -> Taken from -1
    WARNING: Missing SVIB for NM in 0 -> Taken from -1
    WARNING: Missing SROT for NM in 1 -> Taken from 0
    WARNING: Missing STOT for NM in 1 -> Taken from 0
    WARNING: Missing STRA for NM in 1 -> Taken from 0
    WARNING: Missing SVIB for NM in 1 -> Taken from 0
    WARNING: Missing SROT for NM in 2 -> Taken from 1
    WARNING: Missing STOT for NM in 2 -> Taken from 1
    WARNING: Missing STRA for NM in 2 -> Taken from 1
    WARNING: Missing SVIB for NM in 2 -> Taken from 1
    WARNING: Missing SROT for NM in 3 -> Taken from 2
    WARNING: Missing STOT for NM in 3 -> Taken from 2
    WARNING: Missing STRA for NM in 3 -> Taken from 2
    WARNING: Missing SVIB for NM in 3 -> Taken from 2
    WARNING: Missing SROT for NM in 4 -> Taken from 3
    WARNING: Missing STOT for NM in 4 -> Taken from 3
    WARNING: Missing STRA for NM in 4 -> Taken from 3
    WARNING: Missing SVIB for NM in 4 -> Taken from 3
    WARNING: Missing SROT for NM in 5 -> Taken from 4
    WARNING: Missing STOT for NM in 5 -> Taken from 4
    WARNING: Missing STRA for NM in 5 -> Taken from 4
    WARNING: Missing SVIB for NM in 5 -> Taken from 4
    WARNING: Missing SROT for NM in 6 -> Taken from 5
    WARNING: Missing STOT for NM in 6 -> Taken from 5
    WARNING: Missing STRA for NM in 6 -> Taken from 5
    WARNING: Missing SVIB for NM in 6 -> Taken from 5
    WARNING: Missing SROT for NM in 7 -> Taken from 6
    WARNING: Missing STOT for NM in 7 -> Taken from 6
    WARNING: Missing STRA for NM in 7 -> Taken from 6
    WARNING: Missing SVIB for NM in 7 -> Taken from 6
    WARNING: Missing SROT for NM in 8 -> Taken from 7
    WARNING: Missing STOT for NM in 8 -> Taken from 7
    WARNING: Missing STRA for NM in 8 -> Taken from 7
    WARNING: Missing SVIB for NM in 8 -> Taken from 7
    WARNING: Missing SROT for NM in 9 -> Taken from 8
    WARNING: Missing STOT for NM in 9 -> Taken from 8
    WARNING: Missing STRA for NM in 9 -> Taken from 8
    WARNING: Missing SVIB for NM in 9 -> Taken from 8
    WARNING: Missing SROT for NM in 10 -> Taken from 9
    WARNING: Missing STOT for NM in 10 -> Taken from 9
    WARNING: Missing STRA for NM in 10 -> Taken from 9
    WARNING: Missing SVIB for NM in 10 -> Taken from 9
    Reading md35_rec.all.out
    Checking consistency of CALC