source leaprc.ff03
source leaprc.gaff
mods=loadamberparams /home/student/remya/227D/complex_setup/BGF.frcmod
BGF=loadmol2 /home/student/remya/227D/complex_setup/BGF.mol2

complex=loadpdb /home/student/remya/227D/complex_setup/227d_dna_BGF.pdb

saveamberparm complex /home/student/remya/227D/complex_setup/227d_complex.prmtop  /home/student/remya/227D/complex_setup/227d_complex.inpcrd

quit