make[3]: Leaving directory `/usr/local/amber10/src/dcqtp/mod' make[2]: Leaving directory `/usr/local/amber10/src/dcqtp' gfortran -ffree-form -o sander constants.o nose_hoover.o nose_hoover_vars.o nose_hoover_init.o stack.o qmmm_module.o qm2_dftb_module.o trace.o lmod.o decomp.o icosasurf.o egb.o remd.o findmask.o pb_force.o pb_exmol.o pb_mpfrc.o pb_direct.o pb_list.o np_force.o sa_driver.o relax_mat.o nmr.o multisander.o sander.o trajene.o cshf.o nmrcal.o pearsn.o printe.o runmin.o rdparm.o mdread.o locmem.o runmd.o getcor.o degcnt.o decnvh.o fastwt.o parallel.o shake.o ene.o mdwrit.o minrit.o set.o dynlib.o mdfil.o nmlsrc.o ew_force.o ew_setup.o ew_box.o ew_bspline.o ew_fft.o nonbond_list.o short_ene.o ew_recip.o pcshift.o align.o csa.o rfree.o rgroup.o random.o amopen.o debug.o ew_recip_reg.o ew_handle_dips.o ew_dipole_recip.o mexit.o new_time.o extra_pts.o thermo_int.o matinv.o assert.o mmtsb.o mmtsb_client.o erfcfun.o veclib.o is_init.o constantph.o prn_dipoles.o ips.o sglds.o amoeba_valence.o amoeba_multipoles.o amoeba_recip.o amoeba_interface.o amoeba_direct.o amoeba_mdin.o amoeba_adjust.o amoeba_self.o amoeba_vdw.o amoeba_induced.o amoeba_runmd.o bintraj.o spatial_recip.o spatial_fft.o parms.o softcore.o molecule.o xref.o dssp.o qm_mm.o qm_link_atoms.o qm_ewald.o qm_gb.o qm_zero_charges.o qm_print_info.o qm_assign_atom_types.o qm2_allocate_e_repul.o qm2_calc_charges.o qm2_calc_rij_and_eqns.o qm2_dihed.o qm2_energy.o qm2_fock.o qm2_get_qm_forces.o qm2_get_qmmm_forces.o qm2_h1elec.o qm2_hcore_qmqm.o qm2_hcore_qmmm.o qm2_identify_peptide_links.o qm2_load_params_and_allocate.o qm2_repp.o qm2_rotate_qmqm.o qm2_scf.o qm2_setup_orb_exp.o qm2_smallest_number.o qm2_dftb_broyden.o qm2_dftb_dispersion_egr.o qm2_dftb_dispersion_params.o qm2_dftb_dispersionread.o qm2_dftb_scf.o qm2_dftb_energy.o qm2_dftb_ewevge.o qm2_dftb_externalshift.o qm2_dftb_fermi.o qm2_dftb_get_qm_forces.o qm2_dftb_gamma.o qm2_dftb_gammamat.o qm2_dftb_get_qmmm_forces.o qm2_dftb_gettab.o qm2_dftb_load_params.o qm2_dftb_mulliken.o qm2_dftb_repulsiv.o qm2_dftb_self.o qm2_dftb_shift.o qm2_dftb_short_range.o qm2_dftb_skpar.o qm2_dftb_slkode.o qm2_dftb_slktrafo.o qm2_dftb_read_cm3.o qm2_dftb_cm3.o qm2_dftb_ewald.o qm2_dftb_gb.o pimd_vars.o pimd_force.o pimd_init.o cmd_vars.o cmd_matrix.o \ lscivr_vars.o lsc_init.o lsc_xp.o qm_div.o force.o \ ../lmod/lmod.a ../dcqtp/src/qmmm/libdivcon.a mt19937.o ncsu-abmd-hooks.o ncsu-bbmd-ctxt.o ncsu-bbmd-hooks.o ncsu-cftree.o ncsu-colvar-math.o ncsu-colvar-type.o ncsu-colvar-utils.o ncsu-colvar.o ncsu-constants.o ncsu-cv-ANGLE.o ncsu-cv-DISTANCE.o ncsu-cv-HANDEDNESS.o ncsu-cv-MULTI_RMSD.o ncsu-cv-N_OF_BONDS.o ncsu-cv-N_OF_STRUCTURES.o ncsu-cv-R_OF_GYRATION.o ncsu-cv-TORSION.o ncsu-lexer.o ncsu-parser.o ncsu-pmd-hooks.o ncsu-rmsd.o ncsu-sander-hooks.o ncsu-sander-proxy.o ncsu-smd-hooks.o ncsu-umbrella.o ncsu-utils.o ncsu-value.o \ ../lapack/lapack.a ../blas/blas.a \ ../lib/nxtsec.o ../lib/sys.a bintraj.o: In function `__bintraj__checkerror': _bintraj.f:(.text+0xae): undefined reference to `__netcdf__nf90_strerror' bintraj.o: In function `__bintraj__close_binary_files': _bintraj.f:(.text+0x184): undefined reference to `__netcdf__nf90_close' _bintraj.f:(.text+0x1b0): undefined reference to `__netcdf__nf90_close' bintraj.o: In function `__bintraj__write_binary_traj': _bintraj.f:(.text+0x474): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' _bintraj.f:(.text+0x646): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' _bintraj.f:(.text+0x84b): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' _bintraj.f:(.text+0x9f6): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' bintraj.o: In function `__bintraj__end_binary_frame': _bintraj.f:(.text+0xc0b): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' _bintraj.f:(.text+0xc2e): undefined reference to `__netcdf__nf90_sync' _bintraj.f:(.text+0xdcb): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' _bintraj.f:(.text+0xdee): undefined reference to `__netcdf__nf90_sync' bintraj.o: In function `__bintraj__open_nc_file': _bintraj.f:(.text+0xe8b): undefined reference to `__netcdf__nf90_create' _bintraj.f:(.text+0xef0): undefined reference to `__netcdf__nf90_def_dim' _bintraj.f:(.text+0xf30): undefined reference to `__netcdf__nf90_def_dim' _bintraj.f:(.text+0xf5e): undefined reference to `__netcdf__nf90_def_dim' _bintraj.f:(.text+0xf8e): undefined reference to `__netcdf__nf90_def_dim' _bintraj.f:(.text+0xfc2): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0xffe): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x103a): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x1076): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x10b2): undefined reference to `__netcdf__nf90_put_att_text' bintraj.o:_bintraj.f:(.text+0x10ee): more undefined references to `__netcdf__nf90_put_att_text' follow bintraj.o: In function `__bintraj__open_nc_file': _bintraj.f:(.text+0x1188): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x1216): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x124f): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x12aa): undefined reference to `__netcdf__nf90_open' _bintraj.f:(.text+0x12d8): undefined reference to `__netcdf__nf90_inq_dimid' _bintraj.f:(.text+0x130f): undefined reference to `__netcdf__nf90_inquire_dimension' _bintraj.f:(.text+0x1347): undefined reference to `__netcdf__nf90_inq_varid' bintraj.o: In function `__bintraj__end_nc_define': _bintraj.f:(.text+0x1420): undefined reference to `__netcdf__nf90_set_fill' _bintraj.f:(.text+0x144a): undefined reference to `__netcdf__nf90_enddef' _bintraj.f:(.text+0x15c7): undefined reference to `__netcdf__nf90_put_var_1d_text' bintraj.o: In function `__bintraj__open_binary_files': _bintraj.f:(.text+0x1752): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x1790): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x17da): undefined reference to `__netcdf__nf90_inq_varid' _bintraj.f:(.text+0x180c): undefined reference to `__netcdf__nf90_inq_varid' _bintraj.f:(.text+0x199d): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x19db): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x1a13): undefined reference to `__netcdf__nf90_put_att_one_fourbytereal' _bintraj.f:(.text+0x1aa2): undefined reference to `__netcdf__nf90_def_dim' _bintraj.f:(.text+0x1aea): undefined reference to `__netcdf__nf90_def_dim' _bintraj.f:(.text+0x1b74): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x1c0a): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x1ca0): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x1cde): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x1d74): undefined reference to `__netcdf__nf90_def_var_manydims' _bintraj.f:(.text+0x1db2): undefined reference to `__netcdf__nf90_put_att_text' _bintraj.f:(.text+0x1f76): undefined reference to `__netcdf__nf90_put_var_1d_text' _bintraj.f:(.text+0x2154): undefined reference to `__netcdf__nf90_put_var_1d_text' _bintraj.f:(.text+0x2193): undefined reference to `__netcdf__nf90_inq_varid' _bintraj.f:(.text+0x21ca): undefined reference to `__netcdf__nf90_inq_varid' ncsu-umbrella.o: In function `check_rc.1269': _ncsu-umbrella.f:(.text+0x120d): undefined reference to `__netcdf__nf90_strerror' ncsu-umbrella.o: In function `__ncsu_umbrella__umbrella_load': _ncsu-umbrella.f:(.text+0x1391): undefined reference to `__netcdf__nf90_open' _ncsu-umbrella.f:(.text+0x13c0): undefined reference to `__netcdf__nf90_get_att_one_fourbyteint' _ncsu-umbrella.f:(.text+0x1465): undefined reference to `__netcdf__nf90_get_att_fourbyteint' _ncsu-umbrella.f:(.text+0x14e4): undefined reference to `__netcdf__nf90_get_att_fourbyteint' _ncsu-umbrella.f:(.text+0x155f): undefined reference to `__netcdf__nf90_get_att_eightbytereal' _ncsu-umbrella.f:(.text+0x15da): undefined reference to `__netcdf__nf90_get_att_eightbytereal' _ncsu-umbrella.f:(.text+0x18f4): undefined reference to `__netcdf__nf90_inq_dimid' _ncsu-umbrella.f:(.text+0x1920): undefined reference to `__netcdf__nf90_inquire_dimension' _ncsu-umbrella.f:(.text+0x1a3a): undefined reference to `__netcdf__nf90_inq_varid' _ncsu-umbrella.f:(.text+0x1ae0): undefined reference to `__netcdf__nf90_get_var_1d_eightbytereal' _ncsu-umbrella.f:(.text+0x1afc): undefined reference to `__netcdf__nf90_close' ncsu-umbrella.o: In function `check_rc.1153': _ncsu-umbrella.f:(.text+0x1d3d): undefined reference to `__netcdf__nf90_strerror' ncsu-umbrella.o: In function `__ncsu_umbrella__umbrella_save': _ncsu-umbrella.f:(.text+0x1ecd): undefined reference to `__netcdf__nf90_create' _ncsu-umbrella.f:(.text+0x1f44): undefined reference to `__netcdf__nf90_put_att_one_fourbyteint' _ncsu-umbrella.f:(.text+0x1fa2): undefined reference to `__netcdf__nf90_put_att_fourbyteint' _ncsu-umbrella.f:(.text+0x2001): undefined reference to `__netcdf__nf90_put_att_fourbyteint' _ncsu-umbrella.f:(.text+0x205f): undefined reference to `__netcdf__nf90_put_att_eightbytereal' _ncsu-umbrella.f:(.text+0x20c2): undefined reference to `__netcdf__nf90_put_att_eightbytereal' _ncsu-umbrella.f:(.text+0x20e9): undefined reference to `__netcdf__nf90_def_dim' _ncsu-umbrella.f:(.text+0x2113): undefined reference to `__netcdf__nf90_def_var_onedim' _ncsu-umbrella.f:(.text+0x2130): undefined reference to `__netcdf__nf90_enddef' _ncsu-umbrella.f:(.text+0x215b): undefined reference to `__netcdf__nf90_put_var_1d_eightbytereal' _ncsu-umbrella.f:(.text+0x216f): undefined reference to `__netcdf__nf90_close' collect2: ld returned 1 exit status make[1]: *** [sander] Error 1 make[1]: Leaving directory `/usr/local/amber10/src/sander' make: *** [serial] Error 2