AMBER Archive (2009)

Subject: [AMBER] hbond analysis

From: qiaoyan (
Date: Thu Dec 31 2009 - 02:40:22 CST

dear everyone:
    I use ptraj to analyze hbond, but I can't understand the mannual fully, my script is as follows, but it doesn't work, maybe I made a mistake, thank you for your help.
trajin nptmrna1.dcd 1 600 50
donor :70_at_OG print
acceptor :115_at_N6 :115_at_1H6 print
hbond donor :70_at_OG acceptor :115_at_N6 print series hbond
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