AMBER Archive (2009)

Subject: Re: [AMBER] ptraj image

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Dec 08 2009 - 18:29:03 CST

Hi Taufik,

> do you mean
>
> {
> trajin cdsDNAc.mdcrd
> rms first mass out cdsDNAcimage.mdcrd
> go
> }

I've never used ptraj, so can't comment on the syntax.
Either within the imaging script (if ptraj allows effective piping),
or operating on the result file of your imaging operation.

The imaging I don't know enough to comment on.

Bill

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