AMBER Archive (2009)

Subject: Re: [AMBER] ptraj image

From: Bill Ross (ross_at_cgl.ucsf.edu)
Date: Tue Dec 08 2009 - 16:08:42 CST

> the orientation of the dsDNA between the files changes making the movie
> unpleasant to watch. any suggestions?

Try an rms fit to 1st frame in the resulting trajectory.

Bill

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