AMBER Archive (2009)

Subject: RE: [AMBER] non standart residue library creation with tleap (Zn atom)

From: Ross Walker (ross_at_rosswalker.co.uk)
Date: Tue Nov 24 2009 - 10:29:42 CST

> How to create frcomd file then? Manually?
> http://www.rosswalker.co.uk/tutorials/amber_workshop/Tutorial_four/sect
> ion4.htm
> - how was this frcmod file created? Where should I get bond and
> dihedrals parameters then, to measure them in the protein or to make
> estimation by some software?
> I don't quite understand how Ross Walker has made that frcmod file.

I used 'vi' - you can use a text editor of your choosing.

All the best
Ross

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|\oss Walker

| Assistant Research Professor |
| San Diego Supercomputer Center |
| Tel: +1 858 822 0854 | EMail:- ross_at_rosswalker.co.uk |
| http://www.rosswalker.co.uk | http://www.wmd-lab.org/ |

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