AMBER Archive (2009)

Subject: Re: [AMBER] read substrate into leap

From: Jason Swails (
Date: Wed Nov 18 2009 - 12:53:30 CST


When you use the loadpdb command in leap, it loads the coordinates
automatically. For example

l = loadpdb PDBFILE

will load all of the atom types, atom names, and coordinates in PDBFILE in
unit "l".

The short version: coordinates are read in with the PDB file, you don't have
to do anything extra.

I hope this helps,

2009/11/18 sculiujl <>

> HI amber users,
> I have a pdb file which contains the substrate .But I do not know how to
> read the coordinates of substrate into leap.
> Thank you in advance.
> _______________________________________________
> AMBER mailing list

Jason M. Swails
Quantum Theory Project,
University of Florida
Ph.D. Graduate Student
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