AMBER Archive (2009)

Subject: [AMBER] MD snapshots of most probable protein conformations in Amber

From: Andrew Voronkov (drugdesign_at_yandex.ru)
Date: Thu Nov 12 2009 - 07:23:22 CST


Dear Amber users,
are there any tutorials online on usage of some analogs of relaxed complex scheme, described here:
http://www.ncbi.nlm.nih.gov/pmc/articles/PMC2516539/?tool=pubmed#aff-info

I mean optimization of MD trajectory snapshots and usage of most probable protein conformations from MD trajectories in Amber?

Best regards,
Andrey

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