AMBER Archive (2009)

Subject: [AMBER] build up solvate box

From: Huikuan Chao (
Date: Sat Nov 07 2009 - 14:29:50 CST

Hi All~

I am a new in Amber. Now I plan to solvate a protein in rectangular water box with different buffer size in different axis, like x aixls: 10 A to one side 30 to other side. y aixls .... z aixl ...

However, according to the manual Solvatebox can only assign a single buffer size for one axial like { x, y ,z} .

So, do Amber has other function that can meet my plan?


Huikaun Chao
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