AMBER Archive (2009)
Subject: Re: [AMBER] the problem of nucgen.dat
From: case (case_at_biomaps.rutgers.edu)
On Sat, Nov 07, 2009, liangchen88_at_ucla.edu wrote:
> I was trying to run the first tutorial (polyA-polyT) provided with
It actually atom r phi z, in cylindrical coordinates.
> It is different from the format :
I'm not sure why you think the latter format is the correct one; nucgen.dat is
> So that i get the empty pdb file after running nucgen .
I guess we would need more details. The origin of your error is not in the
Alternatives (better!) to nucgen are the fd_helix() routine in NAB, or the