AMBER Archive (2009)
Subject: [AMBER] Ligand covalent bonds appear to be broken
Dear Amber Users,
I am facing a problem when visualizing my simulations with VMD. I am following
1. I convert my crds to pdbs using ptraj. The script for it using the following
rms first out rms @CA
When I load this pdbs to VMD using animatepdbs.tcl script (available at VMD site
2. I use another method for visualization. I directly load my trajectories to
Is this some visualisation effect ? Please help me with your valuable
Thanks a lot in advance.
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