AMBER Archive (2009)
Subject: [AMBER] Salt bridge time scale
From: Mannan (malie_03_at_yahoo.co.in)
Date: Sun Oct 25 2009 - 20:57:20 CDT
Hi Amber Pals,
I would like to plot the time scale of the interaction between Thr Phos and Arg.
I could see visually in VMD, but when calculate the time scale by VMD, I could not get the phospho related stuff, where as I could get Arg-Glu, Arg-Asp. I could not get the % of Hbond analysis as well for the Phos.
I wanted to plot the various interaction like distance between Phos with Arg, Lys.
Thanks in Advance.
Keep up with people you care about with Yahoo! India Mail. Learn how. http://in.overview.mail.yahoo.com/connectmore
AMBER mailing list