AMBER Archive (2009)

Subject: [AMBER] Salt bridge time scale

From: Mannan (
Date: Sun Oct 25 2009 - 20:57:20 CDT

Hi Amber Pals,
I would like to plot the time scale of the interaction between Thr Phos and Arg.
I could see visually in VMD, but when calculate the time scale by VMD, I could not get  the phospho related stuff, where as I could get Arg-Glu, Arg-Asp.  I could not get the % of Hbond analysis as well for the Phos.
I wanted to plot the various interaction like distance between Phos with Arg, Lys.
Thanks in Advance.

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