AMBER Archive (2009)

Subject: [AMBER] How create PRMTOP and INCPRD for surface?

From: rrd (rrd_at_seznam.cz)
Date: Sat Oct 17 2009 - 21:40:02 CDT

Hello,

I try simulate interaction between protein and surface. I have two surfaces for simulation, first is hydrophobic H-terminated diamond and second is hydrophilic OH-terminated diamond. But now, I don't know how make parametrization of these surfaces for Amber (get PRMTOP and INCPRD).

Thanks in advance,

Pavel.

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