AMBER Archive (2009)

Subject: [AMBER] "Cannot open file ATOMTYPE.INF, exit" when using antechamber

From: haifeng yuan (
Date: Tue Oct 13 2009 - 02:44:55 CDT

Dear all,
         The molecule I am interested is a dye labeled short peptide, when
I try to start the MD simulation on my molecule following the
antechamber tutorial HIV-1 RT /EFZ, at the step 4b, it came
up a error: "Cannot open file ATOMTYPE.INF, exit". I don't know
what could be the problem. What else I am wondering is, for my
dye+peptide molecule (around 250 atoms including H atoms), is
there some common procedure I could follow?
         Thank you in advance.


Haifeng YUAN
PhD student
MoNOS, Huygens Laboratorium
Universiteit Leiden
Postbus 9504
2300 RA Leiden (The Netherlands)
Tel.: (31) (0)71 527 5912
Fax: (31) (0)71 527 5819

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