AMBER Archive (2009)
Subject: [AMBER] The -c option in Sander
From: phani ghanakota (gphanionline_at_yahoo.com)
1) I would like to know how the -c option in sander works. If we give a file after the -c option and specify irest = 0 and NTX = 5, will the velocity information be read in?
2) If the velocity information is read in (in the above condition) then is the time not being reset to zero the only advantage of using irest =1 when restarting a MD simulation.