AMBER Archive (2009)
Subject: Re: [AMBER] How to obtain amber top and crd from pdb file with POPE lipids?
From: Hannes Loeffler (hannes.loeffler_at_stfc.ac.uk)
Date: Mon Sep 28 2009 - 02:34:12 CDT
On Mon, 2009-09-28 at 14:52 +1000, decastro_at_physics.usyd.edu.au wrote:
> I went through the amber .lib files in oder to have some hint
> about how to edit the .pdb file, but I can not find anything there
> about the lipids.
Your problem is, obviously, that Amber doesn't come with lipid
parameters. A few people have done membrane simulations with Amber
though. You will have to consult the literature for parameters and
discussions regarding the performance, etc.
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