AMBER Archive (2009)
Subject: [AMBER] apbs-amber
From: Rilei Yu (yulaomao1983_at_yahoo.com.cn)
Hi amber users,
When I used apbs to calculate the binding energy between my protein and its ligand, I found the energy value change greatly with the value of the Grid box. So, now I thinks there may be some problem on my calculation. So I want to know, how amber do this job(to adjust the grid-box for different kind of complex with different size)?
( dime 65 97 129
Thanks for your help in advance?