AMBER Archive (2009)

Subject: RE: [AMBER] Any tutorial on the proper way to merge a ligand and protein?

From: cc cc (
Date: Fri Sep 11 2009 - 13:16:55 CDT

> loadMol2 ligand.mol2 (where ligand.mol2 is created by antechamber) OR
> loadAmberPrep ligand.prepi (where ligand.prepi is created by antechamber)

I think both these lines MUST be included, hence it is not "OR" but "AND". When I tried without the prepi line but only the mol2 line, it did not work.
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