AMBER Archive (2009)

Subject: [AMBER] Creating new counterions

From: Timothy Robbins (trobbins) (
Date: Tue Sep 01 2009 - 14:00:37 CDT

Hello all,

I want to create a set parameters or a library file that will allow me to add Al3+ counterions to a generic DNA oligonucleotide. If at all possible I would like to be able to use these Aluminum ions like the counterions built into Amber10 already such as Na+ or Mg2+. Anybody have any suggestions or know how in this area? Thank you for any help you can provide.


Tim R

University of Memphis


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