AMBER Archive (2009)

Subject: [AMBER] vertex atom mismatch

From: Clark, Tiffany D (
Date: Fri Jul 31 2009 - 08:14:15 CDT

Hello AMBER Gurus ,

I am attempting an mm_pbsa analysis and have come upon the 'vertex atom mismatch' problem. I noticed that several other people have run into this same problem though I have yet to find a solution. I tried changing the box parameters though this has not yielded any success as the problem persists. Following the vertex atom mismatch I have "No skew or curtosis when zero variance in moment" which has been repeated ~25 times.

Thank you for any suggestions which you are willing to offer.


Tiffany D. Clark
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