AMBER Archive (2009)
Subject: [AMBER] What is the meaning of "rms first *"
From: Catein Catherine (askamber23_at_hotmail.com)
Should we expect the rotation and translation motion of whole system removed by "rms first *" command in PCA analysis? What is the * stands for?
If not, what should we do to remove the rotation and translation motion of the system before doing PCA analysis?
Best regards and many thanks in advanced,