AMBER Archive (2009)

Subject: [AMBER] Re: Ambertools 1.2 installation error

From: Bokun Cho (
Date: Mon Jul 27 2009 - 01:51:49 CDT

During the installation of Ambertools 1.2 (make -f Makefile_at) in my LinuxSuse OS , I have encountered the following error.

make[2]: Leaving directory `/usr/local/amber10/src/gleap/plugins'
cd leapsrc; BINDIR=/usr/local/amber10/bin make install
make[2]: Entering directory `/usr/local/amber10/src/gleap/leapsrc'
g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strmain.o strmain.cpp
strmain.cpp:13: warning: unused parameter āsigā
g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o strbuff.o strbuff.cpp
g++ -c -O2 -Wall -W -D_REENTRANT -I../mortsrc -I../mortsrc/guilib -I../plugins -I../freelib -I. -o plugins.o plugins.cpp
g++ -static-libgcc -o sleap strmain.o strbuff.o plugins.o ../freelib/readline/libreadline.a -lm ../plugins/libplugins.a ../mortsrc/libmort.a
cp -p sleap /usr/local/amber10/bin
make[2]: Leaving directory `/usr/local/amber10/src/gleap/leapsrc'
make[1]: Leaving directory `/usr/local/amber10/src/gleap'
make: *** [install] Segmentation fault

I proceeded on to the test and got the following error message.

( cd nab; make test )
make[1]: Entering directory `/usr/local/amber10/test/nab'
Running test to make dna duplex:
make[1]: *** [duplex_test] Segmentation fault
make[1]: Leaving directory `/usr/local/amber10/test/nab'
make: *** [] Error 2

Please enlighten me on how to solve this issue. Thank you.


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