AMBER Archive (2009)

Subject: RE: [AMBER] ptraj - cluster

From: Wei Huang (
Date: Fri Jul 17 2009 - 07:34:00 CDT

Hi Aydin,

Is the "2drms" what you need?


-----Original Message-----
From: [] On Behalf
Of Cihan Aydin
Sent: Thursday, July 16, 2009 12:55 AM
To: AMBER Mailing List
Subject: [AMBER] ptraj - cluster


I have a small question. Is it possible to just get the RMSD matrix for
all frames and just quit without going through the clustering?


Cihan Aydin
UMass Graduate School of Biomedical Sciences
PhD Student @ Schiffer Lab

364 Plantation St. LRB 970M Worcester, MA 01605 +1 (508) 856-3430

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