AMBER Archive (2009)
Subject: [AMBER] Peptide bond broken
From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Dear Amber users,
I have done parameterization of a metallic center of a protein. But during the minimization, the peptide bond between the aminoacid (attached to metal) and the next (to it) is broken. I am unable to find the reason behind it.
Syed Tarique Moin