AMBER Archive (2009)

Subject: [AMBER] Peptide bond broken

From: Syed Tarique Moin (tarisyed_at_yahoo.com)
Date: Fri Jul 10 2009 - 13:19:02 CDT

Dear Amber users,

I have done parameterization of a metallic center of a protein. But during the minimization, the peptide bond between the aminoacid (attached to metal) and the next (to it) is broken. I am unable to find the reason behind it.

Regards

Syed Tarique Moin

      
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