AMBER Archive (2009)

Subject: [AMBER] rmsd_dna

From: balaji nagarajan (
Date: Wed Jul 08 2009 - 11:15:02 CDT

Dear amber ,

I have done dynamics of a DNA ,

and I have built some model for the same ,

I would like to check the Rmsd of my each model with the whole trajectory ,

any one can tell me how to give the input script for ptraj ,
if one considers all the atoms

thanking you

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