AMBER Archive (2009)

Subject: [AMBER] ff parameters

From: oguz gurbulak (
Date: Wed Jul 08 2009 - 09:35:40 CDT

Dear All,
 I study on molecular dynamics simulations. I easily found all parameters for a pyrimidine and a benzene separately but I couldn't find some bond, angle and dihedral parameters between pyrimidine and benzene rings when they are connected to each other as in the figure. For example I couldn't find the dihedral parameter for CA-C!-C!-N .  Could you please help me to learn these parameters ?
Thanks in advance for your helps.
Best regards,

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