AMBER Archive (2009)

Subject: Re: [AMBER] error in tleap of AMBER 10

From: case (case_at_biomaps.rutgers.edu)
Date: Fri Jun 26 2009 - 07:09:58 CDT


On Fri, Jun 26, 2009, kureeckal ramesh wrote:
>
> > Loading Mol2 file: ./TAZ.mol2
> > Reading MOLECULE named TAZ
> > ../tleap: line 9:¬ 8766 Segmentation fault¬ ¬ ¬ ¬ ¬

The problem seems to be that the residue number in the mol2 file (and
presumably, in the pdb file that was used to create it) is "0". Of course,
LEaP should detect this, and either fix it or exit with an error message.
[sleap exits with an assertion failure that would be helpful to developers but
not users.]

The workaround is to change the residue number to a non-zero (positive) value.

...dac

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