AMBER Archive (2009)

Subject: [AMBER] connecting residues

Date: Tue Jun 16 2009 - 10:59:37 CDT

I have made the connectivity of my residues using xleap (my residues had
multiple tails )
set filename tail filename.1.atomname

After making the connectivity ,xleap is making some connectivity itself due
to close contact due to which it is giving me missing parameters for c1-o-ca

I would like to have your suggestion on how can I prevent the connectivity
made automatically due to close contact .
I never used bondbydistance while making the connectivity .

Thanks and Regards
AMBER mailing list