AMBER Archive (2009)
Subject: [AMBER] connecting residues
From: KIRTANA S (skirtana4_at_gmail.com)
Date: Tue Jun 16 2009 - 10:59:37 CDT
I have made the connectivity of my residues using xleap (my residues had
multiple tails )
set filename tail filename.1.atomname
After making the connectivity ,xleap is making some connectivity itself due
to close contact due to which it is giving me missing parameters for c1-o-ca
I would like to have your suggestion on how can I prevent the connectivity
made automatically due to close contact .
I never used bondbydistance while making the connectivity .
Thanks and Regards
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