AMBER Archive (2009)

Subject: RE: [AMBER] Is the result of sander same as that of pmemd?

From: Catein Catherine (
Date: Fri Jun 12 2009 - 21:55:10 CDT

Dear all,


What is the topical values of ntrp ntwx and ntwr for long MD, as the mdcrd files and rstrt will be getting very large the cannot be handle easily? Could you mind to give me some suggestions?


I noted ntrp=100, ntwx=100 and ntwr=1000 was used in the tutorials. Can we increased them further for 3 ns simulations?


Best regards,


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