AMBER Archive (2009)

Subject: Re: [AMBER] AMBER 10: sleap diff errors?

From: David A. Case (
Date: Thu Jun 04 2009 - 14:19:44 CDT

On Thu, Jun 04, 2009, Catein Catherine wrote:
> I noted one Test_failure files after AMBER10 installation. in sleap
> folder as follows, is it necessary to correct this error. Does it only
> affect the sleap but not xleap? What should I do to correct this error?

sleap errors can be ignored if you dont plan to use sleap.

If you want to track it down, you should run the sleap tests by hand, one by
one, and see what is failing. It looks like some complete part of the
calculation is not being run. But we would need to see more complete diffs,
plus info on your compiler and OS.


> possible FAILURE: check source.out.dif
> /home/cmche/amber10/test/sleap/source
> 4,173c4
> < logFile leap.log
> < #
> < # ----- leaprc for loading the parm99 additive force field, no lone pairs
> < # assumes that any unspecified nucleic acids are DNA

Look at the source.out file there any clue there?

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