AMBER Archive (2009)

Subject: Re: [AMBER] creating bond

From: Jorgen Simonsen (
Date: Wed Jun 03 2009 - 14:56:29 CDT

One can not create the bond in the frcmod files?

I have three ligands so it would be easier to create the bond in either the
lib or parm file; in the tutorial the atom is included into one of the lib
files but how it is bond to other is explain other than BOND in frcmod....

On Wed, Jun 3, 2009 at 8:40 PM, Bill Ross <> wrote:

> > ... To create bonds that are not in the library (such
> > as bonds between residues) you need to use the "bond" command in LEaP.
> Or you can draw bonds w/ xleap.
> Bill
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