AMBER Archive (2009)

Subject: Re: [AMBER] Atom names

From: Rose Tamil (rosetamil26_at_googlemail.com)
Date: Tue Jun 02 2009 - 06:50:47 CDT

Thanks to Carlos Simmerling and David for your reply. I got that PDB by
writing gaussian output file as PDB in molden. When i viewed in molden, it
looked alright. I didn't view it in VMD. I'll try to fix that problem.
Thanks again.

On Tue, Jun 2, 2009 at 12:44 PM, David A. Case <case_at_biomaps.rutgers.edu>wrote:

> On Tue, Jun 02, 2009, Rose Tamil wrote:
>
> > com=loadpdb PD_PDB.pdb
>
> The file "PD_PDB.pdb" has garbled coordinates that look nothing like an
> anthracene dimer. You will need to fix this, since this is where LEaP gets
> the coordinates.
>
> ...dac
>
>
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