AMBER Archive (2009)
Subject: [AMBER] Choice of force field
From: manoj singh (mks.amber_at_gmail.com)
Date: Sun May 31 2009 - 15:39:13 CDT
Dear Amber Users,
I am relatively new to Amber and have some doubt.
I am trying to do FEP calculations to study the effect of mutation on
binding affinity of the ligand. I have parameterized the ligand using
antechamber with GAFF. Which version of amber force field would be best
choice for me. I am more inclined towards ff03 but I am not sure and
therefore looking for some expert advise.
AMBER mailing list