AMBER Archive (2009)
Subject: [AMBER] Re: Help with xleap
From: Taufik Al-Sarraj (taufik.alsarraj_at_utoronto.ca)
Date: Tue May 26 2009 - 18:58:00 CDT
I am not really qualified to answer technical questions
Maybe xleap is not installed yet on your computer, you have to create a
link and reinstall ambertools
if i remember correctly i used
sudo ln -s /usr/lib/libXt.so.* /usr/lib/libXt.so
where * is the number you will find in your /usr/lib/ directory
i also cc'ed amber list serve in case i made the wrong recommendation,
Jayalakshmi Sridhar wrote:
> Hi Taufik,
> I am having some problems with xleap. I saw your thread in the amber archive. It looks like you solved the problem on segmentation fault while starting xleap. When I try to start xleap I get the following message. I looked at the x11 libraries. I seem to be having the x11 installed in /usr/lib/libXt.so. Would you be able to help me out in this. I am new to linux and amber. Thanks.
> Jayalakshmi Sridhar.
> # xleap
> Warning: Color name "Tan" is not defined
> Warning: Color name "White" is not defined
> -I: Adding /root/Documents/amber10/dat/leap/prep to search path.
> -I: Adding /root/Documents/amber10/dat/leap/lib to search path.
> -I: Adding /root/Documents/amber10/dat/leap/parm to search path.
> -I: Adding /root/Documents/amber10/dat/leap/cmd to search path.
> Warning: Color name "Black" is not defined
> Warning: Color name "red" is not defined
> Warning: Color name "yellow" is not defined
> /opt/amber10/bin/xleap: line 9: 32020 Segmentation fault /root/Documents/amber10/bin/xaLeap -I/root/Documents/amber10/dat/leap/prep -I/root/Documents/amber10/dat/leap/lib -I/root/Documents/amber10/dat/leap/parm -I/root/Documents/amber10/dat/leap/cmd $*
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