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AMBER Archive (2009)Subject: [AMBER] partial charge and topology of intrastrand cross-link DNA
From: Shuang Ding (sd517_at_nyu.edu)
Hi all,
I try to perform MD simulations of 11mer DNA duplexes which have (1,2) or (1,3) intrastrand cross-links. One of the modified base formed bonds directly with nearby base.
Any suggestion is appreciated. Many thanks!
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