AMBER Archive (2009)

Subject: [AMBER] Alignment of small molecule on peptide fragment

From: Workalemhu Berhanu (
Date: Sat May 16 2009 - 04:32:38 CDT

Dear all
I would like to make a molecular dynamic simulation for beta sheet breaker aligned with an x ray structure of a beta sheet. Could you please give me an idea to make such an alignment using any freely available graphic interfaced software?
With best regard

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