AMBER Archive (2009)
Subject: Re: [OFFLIST] Re: [AMBER] amber9 in fedora10
From: Bala subramanian (bala.biophysics_at_gmail.com)
Date: Thu May 14 2009 - 03:18:07 CDT
I was infact using Amber9 installed without bintraj flag. I did 'make clean'
and tried to re-install with -bintraj flag and i got the problem with
netcdf. I will try intel compiler for sure.
On Thu, May 14, 2009 at 1:43 AM, David Watson <dewatson_at_olemiss.edu> wrote:
> Just a suggestion, with amber and pmemd on Fedora 9, my group got much
> better performance using the Intel fortran compilers.
> You can get the Linux version for free from Intel, assuming you are at an
> educational institution.
> From what I recall, they didn't ask for any proof, not that we would have
> been worried about it.
> On May 13, 2009, at 4:50 AM, Bala subramanian wrote:
>> I am installing amber9 on a system running with Fedora10. I got the
>> following error when i gave 'make serial'. I didnt find any question on
>> error in the mail list archieve. kindly write me what is going wrong. The
>> config.h is attached above.
>> I created the config file with the command: ./configure -bintraj gfortran
>> netcdf.f90:(.text+0x18a5): undefined reference to `nf_inq_varid_'
>> ../netcdf/lib/libnetcdf.a(netcdf.o): In function
>> netcdf.f90:(.text+0x1af5): undefined reference to `nf_rename_var_'
>> collect2: ld returned 1 exit status
>> make: *** [sander] Error 1
>> make: Leaving directory `/usr/local/amber9/src/sander'
>> make: *** [serial] Error 2
>> AMBER mailing list
> David Watson • Graduate Student • Medicinal Chemistry • 425 Faser Hall •
> University MS 38677 • 1.662.915.1663
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