AMBER Archive (2009)
Subject: Re: [AMBER] ambertools for NAMD
From: David A. Case (case_at_biomaps.rutgers.edu)
On Thu, May 07, 2009, Carlos Simmerling wrote:
> I worry that you get a "parm file in amber 7" message- that's pretty old.
Believe it or not, we introduced the "new" prmtop format way back in Amber 7.
> the HW-HW are likely water.
I agree, and these may be treated specially in NAMD. But I'm hoping there are