AMBER Archive (2009)

Subject: [AMBER] Charge problem

From: Remya S R (amm07bi022_at_students.amrita.ac.in)
Date: Tue May 05 2009 - 06:43:47 CDT


    Sir,
          I tried the simulation of dna complexed with DB75. When I view the minimized structure of the complex in Xleap, the charge of the ligand appears to be zero. Is this right? Will it be possible for a ligand bound to DNA, to be neutral? Please help me.

    Sincerely
    Remya S.R

_______________________________________________
AMBER mailing list
AMBER_at_ambermd.org
http://lists.ambermd.org/mailman/listinfo/amber