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AMBER Archive (2009)Subject: Re: [AMBER] creating new residue adds none wanted ter
From: David A. Case (case_at_biomaps.rutgers.edu)
On Mon, May 04, 2009, Jorgen Simonsen wrote:
1. Look at rs_prot.pdb around the given residue. Is there any changes (e.g. a
2. Save a prmtop file, then use ambdpb to make the pdb file. Is the TER card
3. Look at the bonds, either in xleap, or in VMD by loading the prmtop file
...good luck...dac
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