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AMBER Archive (2009)Subject: RE: [AMBER] Using AMBER force fields in NAMD
From: Thomas Cheatham III (tec3_at_utah.edu)
> > I wish to use the AMBER98 force field for some MD studies, but already
If you've been using the CHARMM force field, you might as well use the
http://terpconnect.umd.edu/~jbklauda/research/download.html
> There is no AMBER98 force field as far as I know, so I do not know what the
Yes, there is a parm98 and it was work that Piotr and I did!
Moreover, contrary to Piotr's comments to the list, you cannot use the
If you are going to run DNA, I would recommend ff99SB+parmbsc0 (or on
With RNA, you can likely use either ff99SB or ff99SB+parmbsc0, however
p.s. do not forget the salt; as pointed out recently on the reflector and
--tec3
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