AMBER Archive (2009)

Subject: Re: [AMBER] hpux sander.serial failure info

From: David A. Case (
Date: Thu Apr 09 2009 - 06:56:51 CDT

On Fri, Apr 10, 2009, Yiannis Georgiadis wrote:

> I send you from Univ of Athens more detailed info
> on resolving sander building failure - bus error in many situations-

I must say that you win the prize for the oddest mixture of PASSED and
FAILED test results seen so far :-)

You need to go into the directories where a bus error occurred, (say the
first one, cytosine) and see if there are any clues in the output files.

[One clue I see: it looks like tests that run MD give a bus error; those
that just do minimization seem OK.]

A debugging compile and run is probably going to be needed here.


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