AMBER Archive (2009)

Subject: Re: [AMBER] how to plot this kind of map?

From: Dechang Li (
Date: Thu Apr 09 2009 - 03:46:16 CDT

Dear Lin,

        I assumed that your map is the secondary structure of proteins.
If so, the package DSSP can do it. you can obtain it at Hope help.

>Dear all:
>I'm new on the subject. I've already use the command secstruct in ptraj and get the secstruct.out and secstruct.out.sum. I assumed that secstruct.out can be used to plot the map as attached, but which kind of software can be used to plot the map and how to operate?
>Best regards
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Best regards,

Dechang Li, Ph.D Candidate
Department of Engineering Mechanics
Tsinghua University
Beijing 100084
P.R. China

Tel: +86-10-62773574(O)
Email: lidc02 at

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