AMBER Archive (2009)

Subject: Re: [AMBER] errors while testing

From: Atro Tossavainen (
Date: Tue Apr 07 2009 - 05:18:08 CDT

> Job cre.764 on bohr: received signal FPE.

FPE is a floating point exception.

Are you able to run the same test with the serial version? (Is the
question even applicable...?)

> it returns the following error
> export TESTsander=/appl/ggamess/amber10/amber10/exe/sander.MPI; make
> test.sander.BASIC
> sh: TESTsander=/appl/ggamess/amber10/amber10/exe/sander.MPI: is not an
> identifier

You're speaking bash, and on Solaris, sh is the real deal unlike on Linux...

In sh, the correct syntax is:


In bash, you can shortcut this to:
export IDENTIFIER=value

but doing so in a script that will be run by "/bin/sh" results in the
problem you have described.

Atro Tossavainen (Mr.)               / The Institute of Biotechnology at
Systems Analyst, Techno-Amish &     / the University of Helsinki, Finland,
+358-9-19158939  UNIX Dinosaur     / employs me, but my opinions are my own.
< URL : http : / / www . helsinki . fi / %7E atossava / > NO FILE ATTACHMENTS

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