AMBER Archive (2009)

Subject: RE: [AMBER] Amber with AMOEBA force-field

From: Tomasio, Susana (S.M.T.Tomasio_at_warwick.ac.uk)
Date: Mon Apr 06 2009 - 08:14:22 CDT


All right!

That helped for now!

Thank you very much!

Susana

-----Original Message-----
From: amber-bounces_at_ambermd.org on behalf of David A. Case
Sent: Mon 4/6/2009 2:00 PM
To: AMBER Mailing List
Subject: Re: [AMBER] Amber with AMOEBA force-field
 
On Mon, Apr 06, 2009, Tomasio, Susana wrote:
>
> I am trying to run the example in amber10/test/sleap/amoeba, but I don't
> know how to create and solvate the box in sleap.
> (I mean the commands.. can't find it in the manual!)

The file Run.amoeba_sol shows how to solvate a protein using amoeba. If
that isn't helping, you need to give more detailed information about
exactly what you tried, and what happened.

....dac

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