AMBER Archive (2009)

Subject: Re: [AMBER] How to find out residence time of water molecules

From: Bala subramanian (bala.biophysics_at_gmail.com)
Date: Fri Apr 03 2009 - 01:12:18 CDT

Hi,
You can try carnal program. It can show the water molecules forming hydrogen
bonds in each frame which you can plot to see where these waters are
residing and how long.

Bala

On Fri, Apr 3, 2009 at 3:52 AM, Mannan <malie_03_at_yahoo.co.in> wrote:

> Hi,
> How to find out residence time of water molecules between Ligand and set of
> residues in protein.
>
> Thanks in advance.
> Mannan
>
>
>
>
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