AMBER Archive (2009)

Subject: [AMBER] ambmol2?

From: Taufik Al-Sarraj (
Date: Tue Mar 31 2009 - 17:28:51 CDT


Is the an ambmol2 function in amber? i would like to use
ambpdb -p *.prmtop < *.rst> *.pdb

but to create a mol2, unfortunately i cannot create a pdb file because i
have some atoms named Si400 or H1400 which exceeds the number of digits
allowed in pdb.

alternatively, is there a way to load *.prmtop and *.rst files in
x/t/sleap and use the savemol2 function?


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