AMBER Archive (2009)

Subject: [AMBER] how to convert secstruct output file into plot or pictorial representation

From: Siddharth Rastogi (
Date: Tue Mar 31 2009 - 05:56:37 CDT

Dear Amber users,

using secstruct, I got the output file containing information about
secondary structure form of every residue in every snapshot. But I am facing
problem to convert this information into diagramatic or plot representation.
How to convert this output file into figure showing change in secondary
structure of every residue with simulation time. Please help in this regard.
with thanks in advance,

Siddharth Rastogi
AMBER mailing list